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Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi


Paper Type 
 Contributed Paper
Title 
 Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi
Author 
 Dawei Wang and Youliang Peng*
Email 
 pengy@cau.edu.cn
Abstract:

 The application of transcriptomics for the selection of candidate genes responsible for fungal pathogenicity or fungal-plant interactions is one of the main methods for studying the aetiology of fungal pathogenesis. The major challenge for researchers is to choose an effective technique for the analysis of transcriptomes. Sequencing-based gene expression profiling techniques (SGEPTs) are powerful tools that are used for this purpose. The analytical SGEPTs, which are well-known as extensive sequencing expressed sequence tags (ESTs), serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS), and a revolutionary tool known as RNA sequencing (RNA-seq) have accelerated our understanding of the molecular mechanism of fungal pathogenesis. In this review, we systematically present the methodology and technique considerations of each dominant SGEPT, highlight the application of these techniques in phytopathogenic fungal studies, and briefly consider the future sequencing platform for RNA-seq and the potential application of RNA-seq techniques in phytopathogenic fungi.
Start & End Page 
 922 - 944
Received Date 
 2014-01-02
Revised Date 
Accepted Date 
 2014-01-20
Full Text 
   Download
Keyword 
 phytopathogenic fungi, EST, SAGE, MPSS, RNA-seq
Volume 
 Vol.41 No.4 (SPECIAL ISSUE 1)
DOI 
Citation 
 Wang D. and Peng Y., Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi , Chiang Mai J. Sci., 2014; 41(4): 922-944.
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Vol.44 No.4 (October 2017) View: 604 Download:224
Optimization of Treatment and Energetic Valorization of Chicken Droppings by Anaerobic Digestion
page: 1347 - 1355
Author:Elasri Ouahid and Afilal mohamed Elamin
Vol.44 No.4 (October 2017) View: 596 Download:194
Effect of Resin Supporter on Cross-sectional Scratch Testing of Plasma Sprayed Thermal Barrier Coating
page: 1073 - 1082
Author:Hathaipat Koiprasert*, Sirinee Thaiwatthana and Panadda Niranatlumpong
Vol.44 No.3 (July 2017) View: 605 Download:399
Nickel-catalyzed One-pot, Three-component Synthesis of 3,4-Disubstituted Isoxazole-5(4H)-ones in Aqueous Medium
page: 1011 - 1021
Author:Hamzeh Kiyani* and Heshmat Allah Samimi
Vol.44 No.3 (July 2017) View: 660 Download:223
Thermal Inactivation Kinetics of Peroxidase and Polyphenol Oxidase in Long Bean (Vigna sesquipedalis) and the Changes in their Activities during Storage
page: 881 - 890
Author:Lee Ting Hun, Shalom Wangrangsimakul, Waseem A. Wani, Ee Ling Yong, Ardawati Adnan, Eddie Ti Tjih Ta
Vol.44 No.3 (July 2017) View: 585 Download:381
Seasonal Distribution and Habitat Use of the Green Peafowl Pavo muticus, Linnaeus 1766, in Wiang Lor Wildlife Sanctuary, Phayao Province, Northern Thailand
page: 824 - 838
Author:Ghan Saridnirun, Wina Meckvichai and Pongchai Dumrongrojwatthana*
Vol.44 No.3 (July 2017) View: 636 Download:363
Diversity of Polychaetes in Mangrove Forest, Prasae Estuary, Rayong Province, Thailand
page: 816 - 823
Author:Somtawin Jaritkhuan*, Pongrat Damrongrojwattana, Benchawan Chewprecha and Vichaya Kunbou
Vol.44 No.3 (July 2017) View: 566 Download:256
The Establishment and Activity of Bacterial Inoculant Immobilized in Agar Compared with Those of Alginate and Perlite After Being Introduced Into Soil
page: 751 - 767
Author:Pongrawee Nimnoi*, Neelawan Pongsilp and Saisamorn Lumyong
Vol.44 No.3 (July 2017) View: 588 Download:288
Detection of Bacterial Communities in Volatile-organic-compound (VOC)-contaminated Soil in an Industrial Estate in Eastern Thailand by PCR-DGGE Analysis
page: 742 - 750
Author:Manatsawat Sriwichai, Fairda Malem, Mujalin K. Pholchan and Sakunnee Bovonsombut*
Vol.44 No.3 (July 2017) View: 652 Download:224
Detection of Helicobacter pylori in Aquatic Environments and Drinking Waters in Northeastern Thailand
page: 731 - 741
Author:Chariya Chomvarin*, Warawan Wongboot, Aschana Tirapattanun, Sakawrat Kanthawong, Suwin Wongwajana,
Vol.44 No.3 (July 2017) View: 586 Download:355
The Semi-parametric Prediction in Nonlinear-autoregressive Model for Annual Ring Width of Pinus eldarica
page: 715 - 720
Author:Majid Kiaei* [a], Seyyad Javad Mortazavi [b] and Maryam Veylaki
Vol.44 No.2 (April 2017) View: 580 Download:166
Magnetic Particles-based Chemiluminescence Immunoassay for Progesterone Determination
page: 215 - 223
Author:Wilaiwan Phakthong [a], Gillian M. Greenway [b], Nicole Pamme [b], Boonsom, Liawruangrath [c,d] and Saisunee Liawruangrath*[a,d]
Vol.44 No.1 (JANUARY 2017) View: 661 Download:251
Development and Validation of HPLC with UV Detection Method: Analysis of Cilazparil in Pharmaceutical Dosage Forms
page: 1142 - 1149
Author:Petikam Lavudu [a], Avula Prameela Rani [b], Chandra Bala Sekaran [c]*
Vol.43 No.5 (OCTOBER 2016) View: 681 Download:238
Phenolic Profile, Fatty Acid and Essential Oil Composition Analysis and Antioxidant, Antialzheimer and Antibacterial Activities of Verbascum flavidum Extracts
page: 1090 - 1101
Author:Mehmet Boğa*[a], Abdulselam Ertaş [b], Nesrin Haşimi [c], Serpil Demirci [d], Mustafa Abdullah Yılmaz [e], Hamdi Temel [f] and Ufuk Kolak [g]
Vol.43 No.5 (OCTOBER 2016) View: 651 Download:183
First Successful Cultivation of the Edible Mushroom Macrolepiota dolichaula in Thailand
page: 959 - 971
Author:Leela Maya Rizal [a,b], Kevin D. Hyde [a,b], Ekachai Chukeatirote [a,b], Samantha C. Karunarathna [a,b], Pattana Kakumyan [a,b] and Sunita Chamyuang* [a,b]
Vol.43 No.5 (OCTOBER 2016) View: 959 Download:448
Three Non-parametric Control Charts Based on Ranked Set Sampling
page: 915 - 930
Author:Waliporn Tapang, Adisak Pongpullponsak* and Sukuman Sarikavanij
Vol.43 No.4 (JULY 2016) View: 555 Download:307
A Multigroup SEIR Epidemic Model with Vaccination on Heterogeneous Network
page: 897 - 903
Author:Pichit Boonkrong*[a] and Teerawat Simmachan [b]
Vol.43 No.4 (JULY 2016) View: 581 Download:151
Biofuel Production, Characterization and Degradation of 3-hydroxybutyate Methyl Ester from Polyhydroxybutyrate
page: 808 - 817
Author:Kanokphorn Sangkharak*[a], Nisa Pichid [a], Tewan Yunu[a], Kamonthip Srinak [a], Sasithorn Sornnum [a] and Poonsuk Prasertsan [b]
Vol.43 No.4 (JULY 2016) View: 611 Download:306
1, 3-Propanediol Production from Crude Glycerol by Klebsiella pneumoniae
page: 718 - 725
Author:Jiaxin Wu*[a], Fenghuan Wang[b], Zheng Wang[b], Hua Ye[c] and Peiyi Liu[d]
Vol.43 No.4 (JULY 2016) View: 595 Download:212
Adaptive Estimation of Local Rainfall from Radar Intensity using Rule-based Approach on Temporal and Spatial Data
page: 643 - 660
Author:Rachaneewan Talumassawatdi* [ a], Chidchanok Lursinsap [ a] and Yan Yin[ b]
Vol.43 No.3 (APRIL 2016) View: 552 Download:324
Combined Effect of Calcium Chloride and Modified Atmosphere Packaging on Texture and Quality of Minimally-Processed Litchi Fruit
page: 556 - 569
Author:Putkrong Punumong [a], Sang Moo Kim [b], Jurmkwan Sangsuwan [a] and Nithiya Rattanapanone [a,c]*
Vol.43 No.3 (APRIL 2016) View: 586 Download:177
Fatty Acid, Essential Oil and Phenolic Compositions of Alcea pallida and Alcea apterocarpa with Antioxidant, Anticholinesterase and Antimicrobial Activities
page: 89 - 99
Author:Abdulselam Ertas*[a,b], Mehmet Boga [b,c], Isil Gazioglu [d], Yeter Yesil [e] , Nesrin Hasimi [f], Cumali Ozaslan [g], Hasibe Yilmaz[h], Muammer Kaplan[j]
Vol.43 No.1 (JANUARY 2016) View: 609 Download:246
Alternative Tests for the Poisson Distribution
page: 774 - 782
Author:Manad Khamkong and Pachitjianut Siripanich
Vol.42 No.3 (JULY 2015) View: 546 Download:183
A New Efficient Approximation for Concentration Parameter of Circular Data
page: 528 - 537
Author:Siti Zabariah Satari, Abdul Ghapor Hussin and Yang Zulina Zubairi
Vol.42 No.2 (APRIL 2015) View: 536 Download:314
New Ratio Estimators of a Population Mean Using One Auxiliary Variable in Simple Random Sampling
page: 523 - 527
Author:Wuttichai Srisodaphol, Kunjira Kingphai and Nipaporn Tanjai
Vol.42 No.2 (APRIL 2015) View: 603 Download:291
Biogas Production from Poultry Slaughter House and Food Processing Wastes by Microwave Thermal Pretreatment
page: 456 - 468
Author:Natchari Chuchat , and Wanwisa Skolpap
Vol.42 No.2 (APRIL 2015) View: 637 Download:170
Moult in the Stripe-throated Bulbul, Pycnonotus finlaysoni: sexual differences and timing
page: 339 - 348
Author:Somboon Kamtaeja, Chatmongkol Suwannapoom, Narit Sitasuwan and Siriwadee Chomdej
Vol.42 No.2 (APRIL 2015) View: 578 Download:196
Above- and Below-Ground Ectomycorrhizal Diversity in a Pine-Oak Forest in Northeastern Thailand
page: 79 - 87
Author:Preeyaporn Dokmai, Cherdchai Phosri, Rungpetch Khangrang, Nuttika Suwannasai
Vol.42 No.1 (JANUARY 2015) View: 569 Download:200
Comparative Performances of the Variable Parameters Nonparametric Control Charts using the Markov Chain Approach
page: 1457 - 1472
Author:Adisak Pongpullponsak* and Vadhana Jayathavaj
Vol.41 No.5/2 (OCTOBER 2014) View: 572 Download:187
Effect of Fermented Red Dragon Fruit (Hylocereus polyrhizus) Liquid on Cholesterol and Triglycerides Level of Golden Syrian Hamsters
page: 1084 - 1093
Author:Foong Jia Huan*, Hon Wei Min and Ho Chun Wai
Vol.41 No.5/1 (OCTOBER 2014) View: 686 Download:294
PEG-Mediated Genetic Transformation of Fusarium oxysporum f. sp. Conglutinans to Study Pathogenesis in Cabbage
page: 945 - 956
Author:Wei Zhang*, Wensheng Zhao*, Jinguang Huang, Jianhai Feng*, Hong Yan, Laying Yang, Xinghong Li and Ji
Vol.41 No.4 (SPECIAL ISSUE 1) View: 539 Download:181
Spatial Distribution of Wood-Decaying Fungi in an Old-Growth Temperate Forest
page: 822 - 837
Author:Yu-Lian Wei, Hai-Sheng Yuan, Xu-Gao Wang and Wen-Min Qin
Vol.41 No.4 (SPECIAL ISSUE 1) View: 572 Download:240
Discovering and domesticating wild tropical cultivatable mushrooms
page: 731 - 764
Author:Anan Thawthong, Samantha C. Kurunarathna, Naritsada Thongklang, Ekachai Chukeatirote, Pattana Kakumy
Vol.41 No.4 (SPECIAL ISSUE 1) View: 616 Download:201
Unequal Probability Inverse Adaptive Cluster Sampling
page: 736 - 742
Author:Prayad Sangngam*
Vol.40 No.4 (OCTOBER 2013) View: 631 Download:198
Classification Techniques for Control Chart Pattern Recognition: A Case of Metal Frame for Actuator Production
page: 701 - 712
Author:Wimalin Laosiritaworn*, Tunchanit Bunjongjit
Vol.40 No.4 (OCTOBER 2013) View: 573 Download:186
Methods for Test Suite Selection in the Process of Software Maintenance
page: 689 - 700
Author:Adtha Lawanna
Vol.40 No.4 (OCTOBER 2013) View: 569 Download:189
Estuarine Macrophytes at Bakkhali, Cox’s Bazar, Bangladesh with Reference to Mangrove Diversity
page: 556 - 563
Author:Abu Hena M.K.*[a], Japar Sidik B. [a], Aysha A. [b], Ahasan H. [c] and Short F.T. [d]
Vol.40 No.4 (OCTOBER 2013) View: 624 Download:195
Production of a rabbit polyclonal anti-elephant IgG antibody for the elephant laboratory investigation
page: 376 - 385
Author:Preeyanat Vongchan*
Vol.40 No.3 (JULY 2013) View: 611 Download:250
Surface Modification of Hemp Fabric with Sparked Titanium and Electrophoretically Deposited CNTs for Reinforced Polyester Composites
page: 499 - 506
Author:Somjate Veingnon [a], Yaowamarn Chuminjak [a], and Pisith Singjai* [a], [b]
Vol.40 No.3 (JULY 2013) View: 568 Download:175
Investigation of Horizontal Sightline Offset on Horizontal Curves in Hyrcanian Forest Roads
page: 639 - 647
Author:Mehran Nasiri [a]*
Vol.39 No.4 (OCTOBER 2012) View: 682 Download:161
Multi-Faceted Measurement Framework for Test Case Classification and Fitness Evaluation using Fuzzy Logic based approach
page: 486 - 497
Author:Manoj Kumar*[a], Arun Sharma[b], Rajesh Kumar[c]
Vol.39 No.3 (JULY 2012) View: 615 Download:160
Actinomycetes from Tropical Limestone Caves
page: 373 - 388
Author:Nanthavut Niyomvong, Wasu Pathom-aree, Arinthip Thamchaipenet andKannika Duangmal
Vol.39 No.3 (JULY 2012) View: 610 Download:323
Anti-gastric ulcer and acute oral toxicity of aqueous extract of Turbinaria conoides from the Gulf of Thailand
page: 292 - 299
Author:Walailuck Boonchum[a], Panmuk Vacharapiyasophon[a], Duangta Kanjanapothi[b], Jeeraporn Pekkoh[a], Do
Vol.39 No.2 (APRIL 2012) View: 580 Download:201
Effect of Preliminary Unit Root Tests on Prediction Intervals for Gaussian Autoregressive Process with Additive Outliers
page: 8 - 29
Author:Wararit Panichkitkosolkul and Sa-aat Niwitpong
Vol.39 No.1 (JANUARY 2012) View: 609 Download:159
Preparation and Characterization of PET-PLA Copolyester from Waste PET and Lactic Acid (LA)
page: 619 - 624
Author:Achanai Buasri, Nattawut Chaiyut, Tanit Jenjaka, Sasirada Weerasunthorn and Sureerat Juengrun
Vol.38 No.4 (OCTOBER 2011) View: 565 Download:244
Probability Density Estimation Using Two New Kernel Functions
page: 1 - 12
Author:Manachai Rodchuen and Prachoom Suwattee
Vol.38 No.1 (JANUARY 2011) View: 599 Download:185
Confidence Interval Estimation for Right-Tailed Deviation Risk Measures Under Heavy-Tailed Losses
page: 13 - 22
Author:Monchaya Chiangpradit, Sa-aat Niwitpong
Vol.38 No.1 (JANUARY 2011) View: 595 Download:195
Influence of Seasonality on the Occurrence of Myxomycetes
page: 71 - 84
Author:Thida Win Ko Ko, Steven L. Stephenson, Kevin D. Hyde, and Saisamorn Lumyong
Vol.38 No.1 (JANUARY 2011) View: 555 Download:166
Antiproliferative Activity of Berberine from Coscinium fenestratum on NCI-H838 Cell Line
page: 85 - 94
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham, Shui-Tein Chen
Vol.38 No.1 (JANUARY 2011) View: 622 Download:192
Hexanal Vapours Suppress Spore Germination, Mycelial Growth, and Fungal-derived Cell Wall Degrading Enzymes of Postharvest Pathogens of Longan Fruit
page: 139 - 150
Author:Porntip Thavong, Douglas D. Archbold, Tanachai Pankasemsuk, Rumphan Koslanund
Vol.38 No.1 (JANUARY 2011) View: 627 Download:190
Towards a [4+2] Route to ()-decarestrictines J and H: Synthesis of a Bicyclic Key-intermediate
page: 181 - 184
Author:Sopa Chewchanwuttiwong [a], Arnaud Martel [b], Duang Buddhasukh [a], Eric Brown [b], Florian Gallie
Vol.31 No.2 May 2004 View: 637 Download:166
Ethnobotanical Studies in Muslim Thai Communities Located Around Toh-Daeng Peat Swamp Forest in Thailand
page: 157 - 170
Author:Ubonwan Upho* [a], Chusie Trisonthi [b] and Kongkanda Chayamarit [c]
Vol.31 No.2 May 2004 View: 625 Download:227
Polymerizability of Lactones Calculated by Molecular Mechanics, Semiempirical and Density Functional Theory Methods
page: 55 - 63
Author:Putarat Nimmanpipug, Ancalee Junkaew, Jitrayut Jitonnom and Vannjan Sanghiran Lee
Vol.34 No.1 (JANUARY 2007) View: 610 Download:189
Restricted-range Frequency Scanning of Airborne Reflected Ultrasonic Pulse Amplitudes
page: 23 - 28
Author:Sittisak Siriwitayakorn
Vol.34 No.1 (JANUARY 2007) View: 560 Download:163
Determination of Some Fatty Acids in Local Plant Seeds
page: 249 - 252
Author:Wanna Kanchanamayoon, and Wipada Kanenil
Vol.34 No.2 (MAY 2007) View: 588 Download:199
Biodiesel Synthesis from Transesterification by Clay-based Catalyst
page: 201 - 207
Author:Manut Jaimasith and Satit Phiyanalinmat
Vol.34 No.2 (MAY 2007) View: 632 Download:194
Estimation of Water Content in PEM Fuel Cell
page: 212 - 220
Author:Chinnavat Thawornkuno and Chanin Panjapornpon
Vol.35 No.1 (JANUARY 2008) View: 570 Download:274
Production Methyl Esters from Palm Fatty Acids in Supercritical Methanol
page: 23 - 28
Author:Duangkamol Yujaroen, Artiwan Shotipruk, Motonobu Goto and Mitsuru Sasaki
Vol.35 No.1 (JANUARY 2008) View: 643 Download:210
Investigation of the Crystal Structure in Segmented Triblock L-L actide, e-Caprolactone and Glycolide Terpolymer F ibres
page: 507 - 513
Author:Wasinee Channuan [a], Jintana Siripitayananon* [a], Robert Molloy [a], Montira Sriyai [a] and Geoff
Vol.32 No.3 (SEPTEMBER 2005) View: 539 Download:187
Novel Biodegradable Polyesters for Use as Absorbable Nerve Guides
page: 479 - 486
Author:Winita Punyodom* [a], Robert Molloy [a], Kanarat Nalampang [a], Chatchayanee Kamcharoen [a], Bu
Vol.32 No.3 (SEPTEMBER 2005) View: 625 Download:200
Pressure-Temperature Estimates of the Metamorphosed Sedimentary Rocks on the Eastern Side of Khao Phai, Immediate West of Ban Choeng Chai, Wang Pong, Phetchabun Province, Thailand
page: 283 - 293
Author:Yuenyong Panjasawatwong, Boontarika Srithai and Udomporn Wipakul
Vol.35 No.2 (MAY 2008) View: 602 Download:185
Model Analysis: A Quantum Approach to Analyze Student Understanding
page: 24 - 32
Author:Pornrat Wattanakasiwich, and Supon Ananta
Vol.36 No.1 (JANUARY 2009) View: 604 Download:244
Novel Tin(II) Butoxides for Use as Initiators in the Ring-Opening Polymerisation of ε-Caprolactone
page: 136 - 148
Author:Manita Dumklang, Nilobon Pattawong , Winita Punyodom, Puttinan Meepowpan, Robert Molloy, and Mark H
Vol.36 No.2 (MAY 2009) View: 629 Download:227
Chemical Constituents and Biological Activities of Chromolaena odorata
page: 139 - 148
Author:Nisit Pisutthanan [a,b], Saisunee Liawruangrath [c], John B. Bremner [d] and Boonsom Liawruangrath*
Vol.32 No.2 (MAY 2005) View: 778 Download:327
What Analytical Chemists Do : A Personal Perspective
page: 81 - 92
Author:Gary D. Christian
Vol.32 No.2 (MAY 2005) View: 2,543 Download:424
Effect of Hardness Test on Precipitation Hardening Aluminium Alloy 6061-T6
page: 276 - 286
Author:Chee Fai Tan, and Mohamad R. Said
Vol.36 No.3 (SEPTEMBER 2009) View: 624 Download:302
On Preliminary-prediction Intervals for the Difference Between Two Means with Missing Data
page: 21 - 28
Author:Sa-aat Niwitpong, Pawat Paksaranuwat, and Suparat Niwitpong
Vol.37 No.1 (JANUARY 2010) View: 605 Download:206
New Estimator for an Unknown Mean Gaussian AR(1) Process with Additive Outliers
page: 14 - 20
Author:Wararit Panichkitkosolkul
Vol.37 No.1 (JANUARY 2010) View: 644 Download:159
Nonparametric Methods in the Two-Way Layout
page: 103 - 115
Author:John Öhrvik
Vol.29 No.2 (AUGUST 2002) View: 545 Download:208
Modification of Unrelated Question Randomized Response Model*
page: 49 - 52
Author:Noodchanath Kongchouy and Surin Khanabsakdi**
Vol.29 No.1 (APRIL 2002) View: 565 Download:197
Anti-Cancer Compound Screening and Isolation: Coscinium fenestratum Tinospora crispa and Tinospora cordifolia
page: 476 - 488
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham and Shui-Tein Chen
Vol.37 No.3 (SEPTEMBER 2010) View: 638 Download:261
TPA-ZrO2-SiO2-Catalyzed Polyesterification of TMP Polyester
page: 397 - 409
Author:Li Fang, Xiang-Dong Geng, Diansheng Liu, Jian Gao, Li-Juan He, Ya-Juan Hao and Surin Saipanya
Vol.37 No.3 (SEPTEMBER 2010) View: 655 Download:217



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