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Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi


Paper Type 
Contributed Paper
Title 
Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi
Author 
Dawei Wang and Youliang Peng*
Email 
pengy@cau.edu.cn
Abstract:

 The application of transcriptomics for the selection of candidate genes responsible for fungal pathogenicity or fungal-plant interactions is one of the main methods for studying the aetiology of fungal pathogenesis. The major challenge for researchers is to choose an effective technique for the analysis of transcriptomes. Sequencing-based gene expression profiling techniques (SGEPTs) are powerful tools that are used for this purpose. The analytical SGEPTs, which are well-known as extensive sequencing expressed sequence tags (ESTs), serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS), and a revolutionary tool known as RNA sequencing (RNA-seq) have accelerated our understanding of the molecular mechanism of fungal pathogenesis. In this review, we systematically present the methodology and technique considerations of each dominant SGEPT, highlight the application of these techniques in phytopathogenic fungal studies, and briefly consider the future sequencing platform for RNA-seq and the potential application of RNA-seq techniques in phytopathogenic fungi.

Start & End Page 
922 - 944
Received Date 
2014-01-02
Revised Date 
Accepted Date 
2014-01-20
Full Text 
  Download
Keyword 
phytopathogenic fungi, EST, SAGE, MPSS, RNA-seq
Volume 
Vol.41 No.4 (SPECIAL ISSUE 1)
DOI 
Citation 
Wang D. and Peng Y., Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi , Chiang Mai J. Sci., 2014; 41(4): 922-944.
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Vol.44 No.3 (July 2017) View: 588 Download:173
Thermal Inactivation Kinetics of Peroxidase and Polyphenol Oxidase in Long Bean (Vigna sesquipedalis) and the Changes in their Activities during Storage
page: 881 - 890
Author:Lee Ting Hun, Shalom Wangrangsimakul, Waseem A. Wani, Ee Ling Yong, Ardawati Adnan, Eddie Ti Tjih Ta
Vol.44 No.3 (July 2017) View: 510 Download:296
Seasonal Distribution and Habitat Use of the Green Peafowl Pavo muticus, Linnaeus 1766, in Wiang Lor Wildlife Sanctuary, Phayao Province, Northern Thailand
page: 824 - 838
Author:Ghan Saridnirun, Wina Meckvichai and Pongchai Dumrongrojwatthana*
Vol.44 No.3 (July 2017) View: 561 Download:251
Diversity of Polychaetes in Mangrove Forest, Prasae Estuary, Rayong Province, Thailand
page: 816 - 823
Author:Somtawin Jaritkhuan*, Pongrat Damrongrojwattana, Benchawan Chewprecha and Vichaya Kunbou
Vol.44 No.3 (July 2017) View: 480 Download:164
The Establishment and Activity of Bacterial Inoculant Immobilized in Agar Compared with Those of Alginate and Perlite After Being Introduced Into Soil
page: 751 - 767
Author:Pongrawee Nimnoi*, Neelawan Pongsilp and Saisamorn Lumyong
Vol.44 No.3 (July 2017) View: 508 Download:258
Detection of Bacterial Communities in Volatile-organic-compound (VOC)-contaminated Soil in an Industrial Estate in Eastern Thailand by PCR-DGGE Analysis
page: 742 - 750
Author:Manatsawat Sriwichai, Fairda Malem, Mujalin K. Pholchan and Sakunnee Bovonsombut*
Vol.44 No.3 (July 2017) View: 576 Download:184
Detection of Helicobacter pylori in Aquatic Environments and Drinking Waters in Northeastern Thailand
page: 731 - 741
Author:Chariya Chomvarin*, Warawan Wongboot, Aschana Tirapattanun, Sakawrat Kanthawong, Suwin Wongwajana,
Vol.44 No.3 (July 2017) View: 515 Download:206
The Semi-parametric Prediction in Nonlinear-autoregressive Model for Annual Ring Width of Pinus eldarica
page: 715 - 720
Author:Majid Kiaei* [a], Seyyad Javad Mortazavi [b] and Maryam Veylaki
Vol.44 No.2 (April 2017) View: 501 Download:129
Magnetic Particles-based Chemiluminescence Immunoassay for Progesterone Determination
page: 215 - 223
Author:Wilaiwan Phakthong [a], Gillian M. Greenway [b], Nicole Pamme [b], Boonsom, Liawruangrath [c,d] and Saisunee Liawruangrath*[a,d]
Vol.44 No.1 (JANUARY 2017) View: 586 Download:213
Development and Validation of HPLC with UV Detection Method: Analysis of Cilazparil in Pharmaceutical Dosage Forms
page: 1142 - 1149
Author:Petikam Lavudu [a], Avula Prameela Rani [b], Chandra Bala Sekaran [c]*
Vol.43 No.5 (OCTOBER 2016) View: 603 Download:183
Phenolic Profile, Fatty Acid and Essential Oil Composition Analysis and Antioxidant, Antialzheimer and Antibacterial Activities of Verbascum flavidum Extracts
page: 1090 - 1101
Author:Mehmet Boğa*[a], Abdulselam Ertaş [b], Nesrin Haşimi [c], Serpil Demirci [d], Mustafa Abdullah Yılmaz [e], Hamdi Temel [f] and Ufuk Kolak [g]
Vol.43 No.5 (OCTOBER 2016) View: 547 Download:157
First Successful Cultivation of the Edible Mushroom Macrolepiota dolichaula in Thailand
page: 959 - 971
Author:Leela Maya Rizal [a,b], Kevin D. Hyde [a,b], Ekachai Chukeatirote [a,b], Samantha C. Karunarathna [a,b], Pattana Kakumyan [a,b] and Sunita Chamyuang* [a,b]
Vol.43 No.5 (OCTOBER 2016) View: 826 Download:305
Three Non-parametric Control Charts Based on Ranked Set Sampling
page: 915 - 930
Author:Waliporn Tapang, Adisak Pongpullponsak* and Sukuman Sarikavanij
Vol.43 No.4 (JULY 2016) View: 491 Download:249
A Multigroup SEIR Epidemic Model with Vaccination on Heterogeneous Network
page: 897 - 903
Author:Pichit Boonkrong*[a] and Teerawat Simmachan [b]
Vol.43 No.4 (JULY 2016) View: 500 Download:119
Biofuel Production, Characterization and Degradation of 3-hydroxybutyate Methyl Ester from Polyhydroxybutyrate
page: 808 - 817
Author:Kanokphorn Sangkharak*[a], Nisa Pichid [a], Tewan Yunu[a], Kamonthip Srinak [a], Sasithorn Sornnum [a] and Poonsuk Prasertsan [b]
Vol.43 No.4 (JULY 2016) View: 532 Download:251
1, 3-Propanediol Production from Crude Glycerol by Klebsiella pneumoniae
page: 718 - 725
Author:Jiaxin Wu*[a], Fenghuan Wang[b], Zheng Wang[b], Hua Ye[c] and Peiyi Liu[d]
Vol.43 No.4 (JULY 2016) View: 511 Download:155
Adaptive Estimation of Local Rainfall from Radar Intensity using Rule-based Approach on Temporal and Spatial Data
page: 643 - 660
Author:Rachaneewan Talumassawatdi* [ a], Chidchanok Lursinsap [ a] and Yan Yin[ b]
Vol.43 No.3 (APRIL 2016) View: 482 Download:229
Combined Effect of Calcium Chloride and Modified Atmosphere Packaging on Texture and Quality of Minimally-Processed Litchi Fruit
page: 556 - 569
Author:Putkrong Punumong [a], Sang Moo Kim [b], Jurmkwan Sangsuwan [a] and Nithiya Rattanapanone [a,c]*
Vol.43 No.3 (APRIL 2016) View: 512 Download:141
Fatty Acid, Essential Oil and Phenolic Compositions of Alcea pallida and Alcea apterocarpa with Antioxidant, Anticholinesterase and Antimicrobial Activities
page: 89 - 99
Author:Abdulselam Ertas*[a,b], Mehmet Boga [b,c], Isil Gazioglu [d], Yeter Yesil [e] , Nesrin Hasimi [f], Cumali Ozaslan [g], Hasibe Yilmaz[h], Muammer Kaplan[j]
Vol.43 No.1 (JANUARY 2016) View: 503 Download:201
Alternative Tests for the Poisson Distribution
page: 774 - 782
Author:Manad Khamkong and Pachitjianut Siripanich
Vol.42 No.3 (JULY 2015) View: 479 Download:149
A New Efficient Approximation for Concentration Parameter of Circular Data
page: 528 - 537
Author:Siti Zabariah Satari, Abdul Ghapor Hussin and Yang Zulina Zubairi
Vol.42 No.2 (APRIL 2015) View: 462 Download:257
New Ratio Estimators of a Population Mean Using One Auxiliary Variable in Simple Random Sampling
page: 523 - 527
Author:Wuttichai Srisodaphol, Kunjira Kingphai and Nipaporn Tanjai
Vol.42 No.2 (APRIL 2015) View: 528 Download:196
Biogas Production from Poultry Slaughter House and Food Processing Wastes by Microwave Thermal Pretreatment
page: 456 - 468
Author:Natchari Chuchat , and Wanwisa Skolpap
Vol.42 No.2 (APRIL 2015) View: 555 Download:137
Moult in the Stripe-throated Bulbul, Pycnonotus finlaysoni: sexual differences and timing
page: 339 - 348
Author:Somboon Kamtaeja, Chatmongkol Suwannapoom, Narit Sitasuwan and Siriwadee Chomdej
Vol.42 No.2 (APRIL 2015) View: 496 Download:161
Above- and Below-Ground Ectomycorrhizal Diversity in a Pine-Oak Forest in Northeastern Thailand
page: 79 - 87
Author:Preeyaporn Dokmai, Cherdchai Phosri, Rungpetch Khangrang, Nuttika Suwannasai
Vol.42 No.1 (JANUARY 2015) View: 495 Download:154
Comparative Performances of the Variable Parameters Nonparametric Control Charts using the Markov Chain Approach
page: 1457 - 1472
Author:Adisak Pongpullponsak* and Vadhana Jayathavaj
Vol.41 No.5/2 (OCTOBER 2014) View: 492 Download:145
Effect of Fermented Red Dragon Fruit (Hylocereus polyrhizus) Liquid on Cholesterol and Triglycerides Level of Golden Syrian Hamsters
page: 1084 - 1093
Author:Foong Jia Huan*, Hon Wei Min and Ho Chun Wai
Vol.41 No.5/1 (OCTOBER 2014) View: 589 Download:250
PEG-Mediated Genetic Transformation of Fusarium oxysporum f. sp. Conglutinans to Study Pathogenesis in Cabbage
page: 945 - 956
Author:Wei Zhang*, Wensheng Zhao*, Jinguang Huang, Jianhai Feng*, Hong Yan, Laying Yang, Xinghong Li and Ji
Vol.41 No.4 (SPECIAL ISSUE 1) View: 470 Download:142
Spatial Distribution of Wood-Decaying Fungi in an Old-Growth Temperate Forest
page: 822 - 837
Author:Yu-Lian Wei, Hai-Sheng Yuan, Xu-Gao Wang and Wen-Min Qin
Vol.41 No.4 (SPECIAL ISSUE 1) View: 500 Download:208
Discovering and domesticating wild tropical cultivatable mushrooms
page: 731 - 764
Author:Anan Thawthong, Samantha C. Kurunarathna, Naritsada Thongklang, Ekachai Chukeatirote, Pattana Kakumy
Vol.41 No.4 (SPECIAL ISSUE 1) View: 534 Download:166
Unequal Probability Inverse Adaptive Cluster Sampling
page: 736 - 742
Author:Prayad Sangngam*
Vol.40 No.4 (OCTOBER 2013) View: 534 Download:153
Classification Techniques for Control Chart Pattern Recognition: A Case of Metal Frame for Actuator Production
page: 701 - 712
Author:Wimalin Laosiritaworn*, Tunchanit Bunjongjit
Vol.40 No.4 (OCTOBER 2013) View: 505 Download:151
Methods for Test Suite Selection in the Process of Software Maintenance
page: 689 - 700
Author:Adtha Lawanna
Vol.40 No.4 (OCTOBER 2013) View: 497 Download:157
Estuarine Macrophytes at Bakkhali, Cox’s Bazar, Bangladesh with Reference to Mangrove Diversity
page: 556 - 563
Author:Abu Hena M.K.*[a], Japar Sidik B. [a], Aysha A. [b], Ahasan H. [c] and Short F.T. [d]
Vol.40 No.4 (OCTOBER 2013) View: 520 Download:152
Production of a rabbit polyclonal anti-elephant IgG antibody for the elephant laboratory investigation
page: 376 - 385
Author:Preeyanat Vongchan*
Vol.40 No.3 (JULY 2013) View: 528 Download:219
Surface Modification of Hemp Fabric with Sparked Titanium and Electrophoretically Deposited CNTs for Reinforced Polyester Composites
page: 499 - 506
Author:Somjate Veingnon [a], Yaowamarn Chuminjak [a], and Pisith Singjai* [a], [b]
Vol.40 No.3 (JULY 2013) View: 490 Download:134
Investigation of Horizontal Sightline Offset on Horizontal Curves in Hyrcanian Forest Roads
page: 639 - 647
Author:Mehran Nasiri [a]*
Vol.39 No.4 (OCTOBER 2012) View: 604 Download:130
Multi-Faceted Measurement Framework for Test Case Classification and Fitness Evaluation using Fuzzy Logic based approach
page: 486 - 497
Author:Manoj Kumar*[a], Arun Sharma[b], Rajesh Kumar[c]
Vol.39 No.3 (JULY 2012) View: 536 Download:133
Actinomycetes from Tropical Limestone Caves
page: 373 - 388
Author:Nanthavut Niyomvong, Wasu Pathom-aree, Arinthip Thamchaipenet andKannika Duangmal
Vol.39 No.3 (JULY 2012) View: 527 Download:285
Anti-gastric ulcer and acute oral toxicity of aqueous extract of Turbinaria conoides from the Gulf of Thailand
page: 292 - 299
Author:Walailuck Boonchum[a], Panmuk Vacharapiyasophon[a], Duangta Kanjanapothi[b], Jeeraporn Pekkoh[a], Do
Vol.39 No.2 (APRIL 2012) View: 506 Download:169
Effect of Preliminary Unit Root Tests on Prediction Intervals for Gaussian Autoregressive Process with Additive Outliers
page: 8 - 29
Author:Wararit Panichkitkosolkul and Sa-aat Niwitpong
Vol.39 No.1 (JANUARY 2012) View: 536 Download:135
Preparation and Characterization of PET-PLA Copolyester from Waste PET and Lactic Acid (LA)
page: 619 - 624
Author:Achanai Buasri, Nattawut Chaiyut, Tanit Jenjaka, Sasirada Weerasunthorn and Sureerat Juengrun
Vol.38 No.4 (OCTOBER 2011) View: 492 Download:186
Probability Density Estimation Using Two New Kernel Functions
page: 1 - 12
Author:Manachai Rodchuen and Prachoom Suwattee
Vol.38 No.1 (JANUARY 2011) View: 523 Download:156
Confidence Interval Estimation for Right-Tailed Deviation Risk Measures Under Heavy-Tailed Losses
page: 13 - 22
Author:Monchaya Chiangpradit, Sa-aat Niwitpong
Vol.38 No.1 (JANUARY 2011) View: 514 Download:160
Influence of Seasonality on the Occurrence of Myxomycetes
page: 71 - 84
Author:Thida Win Ko Ko, Steven L. Stephenson, Kevin D. Hyde, and Saisamorn Lumyong
Vol.38 No.1 (JANUARY 2011) View: 475 Download:137
Antiproliferative Activity of Berberine from Coscinium fenestratum on NCI-H838 Cell Line
page: 85 - 94
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham, Shui-Tein Chen
Vol.38 No.1 (JANUARY 2011) View: 546 Download:165
Hexanal Vapours Suppress Spore Germination, Mycelial Growth, and Fungal-derived Cell Wall Degrading Enzymes of Postharvest Pathogens of Longan Fruit
page: 139 - 150
Author:Porntip Thavong, Douglas D. Archbold, Tanachai Pankasemsuk, Rumphan Koslanund
Vol.38 No.1 (JANUARY 2011) View: 528 Download:159
Towards a [4+2] Route to ()-decarestrictines J and H: Synthesis of a Bicyclic Key-intermediate
page: 181 - 184
Author:Sopa Chewchanwuttiwong [a], Arnaud Martel [b], Duang Buddhasukh [a], Eric Brown [b], Florian Gallie
Vol.31 No.2 May 2004 View: 558 Download:135
Ethnobotanical Studies in Muslim Thai Communities Located Around Toh-Daeng Peat Swamp Forest in Thailand
page: 157 - 170
Author:Ubonwan Upho* [a], Chusie Trisonthi [b] and Kongkanda Chayamarit [c]
Vol.31 No.2 May 2004 View: 532 Download:200
Polymerizability of Lactones Calculated by Molecular Mechanics, Semiempirical and Density Functional Theory Methods
page: 55 - 63
Author:Putarat Nimmanpipug, Ancalee Junkaew, Jitrayut Jitonnom and Vannjan Sanghiran Lee
Vol.34 No.1 (JANUARY 2007) View: 495 Download:151
Restricted-range Frequency Scanning of Airborne Reflected Ultrasonic Pulse Amplitudes
page: 23 - 28
Author:Sittisak Siriwitayakorn
Vol.34 No.1 (JANUARY 2007) View: 478 Download:137
Determination of Some Fatty Acids in Local Plant Seeds
page: 249 - 252
Author:Wanna Kanchanamayoon, and Wipada Kanenil
Vol.34 No.2 (MAY 2007) View: 507 Download:168
Biodiesel Synthesis from Transesterification by Clay-based Catalyst
page: 201 - 207
Author:Manut Jaimasith and Satit Phiyanalinmat
Vol.34 No.2 (MAY 2007) View: 542 Download:162
Estimation of Water Content in PEM Fuel Cell
page: 212 - 220
Author:Chinnavat Thawornkuno and Chanin Panjapornpon
Vol.35 No.1 (JANUARY 2008) View: 492 Download:239
Production Methyl Esters from Palm Fatty Acids in Supercritical Methanol
page: 23 - 28
Author:Duangkamol Yujaroen, Artiwan Shotipruk, Motonobu Goto and Mitsuru Sasaki
Vol.35 No.1 (JANUARY 2008) View: 573 Download:175
Investigation of the Crystal Structure in Segmented Triblock L-L actide, e-Caprolactone and Glycolide Terpolymer F ibres
page: 507 - 513
Author:Wasinee Channuan [a], Jintana Siripitayananon* [a], Robert Molloy [a], Montira Sriyai [a] and Geoff
Vol.32 No.3 (SEPTEMBER 2005) View: 470 Download:141
Novel Biodegradable Polyesters for Use as Absorbable Nerve Guides
page: 479 - 486
Author:Winita Punyodom* [a], Robert Molloy [a], Kanarat Nalampang [a], Chatchayanee Kamcharoen [a], Bu
Vol.32 No.3 (SEPTEMBER 2005) View: 547 Download:166
Pressure-Temperature Estimates of the Metamorphosed Sedimentary Rocks on the Eastern Side of Khao Phai, Immediate West of Ban Choeng Chai, Wang Pong, Phetchabun Province, Thailand
page: 283 - 293
Author:Yuenyong Panjasawatwong, Boontarika Srithai and Udomporn Wipakul
Vol.35 No.2 (MAY 2008) View: 515 Download:159
Model Analysis: A Quantum Approach to Analyze Student Understanding
page: 24 - 32
Author:Pornrat Wattanakasiwich, and Supon Ananta
Vol.36 No.1 (JANUARY 2009) View: 523 Download:203
Novel Tin(II) Butoxides for Use as Initiators in the Ring-Opening Polymerisation of ε-Caprolactone
page: 136 - 148
Author:Manita Dumklang, Nilobon Pattawong , Winita Punyodom, Puttinan Meepowpan, Robert Molloy, and Mark H
Vol.36 No.2 (MAY 2009) View: 553 Download:169
Chemical Constituents and Biological Activities of Chromolaena odorata
page: 139 - 148
Author:Nisit Pisutthanan [a,b], Saisunee Liawruangrath [c], John B. Bremner [d] and Boonsom Liawruangrath*
Vol.32 No.2 (MAY 2005) View: 701 Download:298
What Analytical Chemists Do : A Personal Perspective
page: 81 - 92
Author:Gary D. Christian
Vol.32 No.2 (MAY 2005) View: 2,327 Download:387
Effect of Hardness Test on Precipitation Hardening Aluminium Alloy 6061-T6
page: 276 - 286
Author:Chee Fai Tan, and Mohamad R. Said
Vol.36 No.3 (SEPTEMBER 2009) View: 539 Download:252
On Preliminary-prediction Intervals for the Difference Between Two Means with Missing Data
page: 21 - 28
Author:Sa-aat Niwitpong, Pawat Paksaranuwat, and Suparat Niwitpong
Vol.37 No.1 (JANUARY 2010) View: 528 Download:164
New Estimator for an Unknown Mean Gaussian AR(1) Process with Additive Outliers
page: 14 - 20
Author:Wararit Panichkitkosolkul
Vol.37 No.1 (JANUARY 2010) View: 569 Download:130
Nonparametric Methods in the Two-Way Layout
page: 103 - 115
Author:John Öhrvik
Vol.29 No.2 (AUGUST 2002) View: 475 Download:168
Modification of Unrelated Question Randomized Response Model*
page: 49 - 52
Author:Noodchanath Kongchouy and Surin Khanabsakdi**
Vol.29 No.1 (APRIL 2002) View: 497 Download:153
Anti-Cancer Compound Screening and Isolation: Coscinium fenestratum Tinospora crispa and Tinospora cordifolia
page: 476 - 488
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham and Shui-Tein Chen
Vol.37 No.3 (SEPTEMBER 2010) View: 557 Download:228
TPA-ZrO2-SiO2-Catalyzed Polyesterification of TMP Polyester
page: 397 - 409
Author:Li Fang, Xiang-Dong Geng, Diansheng Liu, Jian Gao, Li-Juan He, Ya-Juan Hao and Surin Saipanya
Vol.37 No.3 (SEPTEMBER 2010) View: 567 Download:169



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