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Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi


Paper Type 
 Contributed Paper
Title 
 Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi
Author 
 Dawei Wang and Youliang Peng*
Email 
 pengy@cau.edu.cn
Abstract:

 The application of transcriptomics for the selection of candidate genes responsible for fungal pathogenicity or fungal-plant interactions is one of the main methods for studying the aetiology of fungal pathogenesis. The major challenge for researchers is to choose an effective technique for the analysis of transcriptomes. Sequencing-based gene expression profiling techniques (SGEPTs) are powerful tools that are used for this purpose. The analytical SGEPTs, which are well-known as extensive sequencing expressed sequence tags (ESTs), serial analysis of gene expression (SAGE), massively parallel signature sequencing (MPSS), and a revolutionary tool known as RNA sequencing (RNA-seq) have accelerated our understanding of the molecular mechanism of fungal pathogenesis. In this review, we systematically present the methodology and technique considerations of each dominant SGEPT, highlight the application of these techniques in phytopathogenic fungal studies, and briefly consider the future sequencing platform for RNA-seq and the potential application of RNA-seq techniques in phytopathogenic fungi.
Start & End Page 
 922 - 944
Received Date 
 2014-01-02
Revised Date 
Accepted Date 
 2014-01-20
Full Text 
   Download
Keyword 
 phytopathogenic fungi, EST, SAGE, MPSS, RNA-seq
Volume 
 Vol.41 No.4 (SPECIAL ISSUE 1)
DOI 
Citation 
 Wang D. and Peng Y., Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi , Chiang Mai J. Sci., 2014; 41(4): 922-944.
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page: 1011 - 1021
Author:Hamzeh Kiyani* and Heshmat Allah Samimi
Vol.44 No.3 (July 2017) View: 600 Download:180
Thermal Inactivation Kinetics of Peroxidase and Polyphenol Oxidase in Long Bean (Vigna sesquipedalis) and the Changes in their Activities during Storage
page: 881 - 890
Author:Lee Ting Hun, Shalom Wangrangsimakul, Waseem A. Wani, Ee Ling Yong, Ardawati Adnan, Eddie Ti Tjih Ta
Vol.44 No.3 (July 2017) View: 522 Download:309
Seasonal Distribution and Habitat Use of the Green Peafowl Pavo muticus, Linnaeus 1766, in Wiang Lor Wildlife Sanctuary, Phayao Province, Northern Thailand
page: 824 - 838
Author:Ghan Saridnirun, Wina Meckvichai and Pongchai Dumrongrojwatthana*
Vol.44 No.3 (July 2017) View: 574 Download:274
Diversity of Polychaetes in Mangrove Forest, Prasae Estuary, Rayong Province, Thailand
page: 816 - 823
Author:Somtawin Jaritkhuan*, Pongrat Damrongrojwattana, Benchawan Chewprecha and Vichaya Kunbou
Vol.44 No.3 (July 2017) View: 494 Download:202
The Establishment and Activity of Bacterial Inoculant Immobilized in Agar Compared with Those of Alginate and Perlite After Being Introduced Into Soil
page: 751 - 767
Author:Pongrawee Nimnoi*, Neelawan Pongsilp and Saisamorn Lumyong
Vol.44 No.3 (July 2017) View: 520 Download:261
Detection of Bacterial Communities in Volatile-organic-compound (VOC)-contaminated Soil in an Industrial Estate in Eastern Thailand by PCR-DGGE Analysis
page: 742 - 750
Author:Manatsawat Sriwichai, Fairda Malem, Mujalin K. Pholchan and Sakunnee Bovonsombut*
Vol.44 No.3 (July 2017) View: 591 Download:188
Detection of Helicobacter pylori in Aquatic Environments and Drinking Waters in Northeastern Thailand
page: 731 - 741
Author:Chariya Chomvarin*, Warawan Wongboot, Aschana Tirapattanun, Sakawrat Kanthawong, Suwin Wongwajana,
Vol.44 No.3 (July 2017) View: 531 Download:230
The Semi-parametric Prediction in Nonlinear-autoregressive Model for Annual Ring Width of Pinus eldarica
page: 715 - 720
Author:Majid Kiaei* [a], Seyyad Javad Mortazavi [b] and Maryam Veylaki
Vol.44 No.2 (April 2017) View: 513 Download:131
Magnetic Particles-based Chemiluminescence Immunoassay for Progesterone Determination
page: 215 - 223
Author:Wilaiwan Phakthong [a], Gillian M. Greenway [b], Nicole Pamme [b], Boonsom, Liawruangrath [c,d] and Saisunee Liawruangrath*[a,d]
Vol.44 No.1 (JANUARY 2017) View: 598 Download:220
Development and Validation of HPLC with UV Detection Method: Analysis of Cilazparil in Pharmaceutical Dosage Forms
page: 1142 - 1149
Author:Petikam Lavudu [a], Avula Prameela Rani [b], Chandra Bala Sekaran [c]*
Vol.43 No.5 (OCTOBER 2016) View: 617 Download:187
Phenolic Profile, Fatty Acid and Essential Oil Composition Analysis and Antioxidant, Antialzheimer and Antibacterial Activities of Verbascum flavidum Extracts
page: 1090 - 1101
Author:Mehmet Boğa*[a], Abdulselam Ertaş [b], Nesrin Haşimi [c], Serpil Demirci [d], Mustafa Abdullah Yılmaz [e], Hamdi Temel [f] and Ufuk Kolak [g]
Vol.43 No.5 (OCTOBER 2016) View: 569 Download:159
First Successful Cultivation of the Edible Mushroom Macrolepiota dolichaula in Thailand
page: 959 - 971
Author:Leela Maya Rizal [a,b], Kevin D. Hyde [a,b], Ekachai Chukeatirote [a,b], Samantha C. Karunarathna [a,b], Pattana Kakumyan [a,b] and Sunita Chamyuang* [a,b]
Vol.43 No.5 (OCTOBER 2016) View: 851 Download:342
Three Non-parametric Control Charts Based on Ranked Set Sampling
page: 915 - 930
Author:Waliporn Tapang, Adisak Pongpullponsak* and Sukuman Sarikavanij
Vol.43 No.4 (JULY 2016) View: 502 Download:279
A Multigroup SEIR Epidemic Model with Vaccination on Heterogeneous Network
page: 897 - 903
Author:Pichit Boonkrong*[a] and Teerawat Simmachan [b]
Vol.43 No.4 (JULY 2016) View: 515 Download:125
Biofuel Production, Characterization and Degradation of 3-hydroxybutyate Methyl Ester from Polyhydroxybutyrate
page: 808 - 817
Author:Kanokphorn Sangkharak*[a], Nisa Pichid [a], Tewan Yunu[a], Kamonthip Srinak [a], Sasithorn Sornnum [a] and Poonsuk Prasertsan [b]
Vol.43 No.4 (JULY 2016) View: 546 Download:278
1, 3-Propanediol Production from Crude Glycerol by Klebsiella pneumoniae
page: 718 - 725
Author:Jiaxin Wu*[a], Fenghuan Wang[b], Zheng Wang[b], Hua Ye[c] and Peiyi Liu[d]
Vol.43 No.4 (JULY 2016) View: 524 Download:164
Adaptive Estimation of Local Rainfall from Radar Intensity using Rule-based Approach on Temporal and Spatial Data
page: 643 - 660
Author:Rachaneewan Talumassawatdi* [ a], Chidchanok Lursinsap [ a] and Yan Yin[ b]
Vol.43 No.3 (APRIL 2016) View: 496 Download:234
Combined Effect of Calcium Chloride and Modified Atmosphere Packaging on Texture and Quality of Minimally-Processed Litchi Fruit
page: 556 - 569
Author:Putkrong Punumong [a], Sang Moo Kim [b], Jurmkwan Sangsuwan [a] and Nithiya Rattanapanone [a,c]*
Vol.43 No.3 (APRIL 2016) View: 523 Download:145
Fatty Acid, Essential Oil and Phenolic Compositions of Alcea pallida and Alcea apterocarpa with Antioxidant, Anticholinesterase and Antimicrobial Activities
page: 89 - 99
Author:Abdulselam Ertas*[a,b], Mehmet Boga [b,c], Isil Gazioglu [d], Yeter Yesil [e] , Nesrin Hasimi [f], Cumali Ozaslan [g], Hasibe Yilmaz[h], Muammer Kaplan[j]
Vol.43 No.1 (JANUARY 2016) View: 520 Download:204
Alternative Tests for the Poisson Distribution
page: 774 - 782
Author:Manad Khamkong and Pachitjianut Siripanich
Vol.42 No.3 (JULY 2015) View: 491 Download:154
A New Efficient Approximation for Concentration Parameter of Circular Data
page: 528 - 537
Author:Siti Zabariah Satari, Abdul Ghapor Hussin and Yang Zulina Zubairi
Vol.42 No.2 (APRIL 2015) View: 471 Download:263
New Ratio Estimators of a Population Mean Using One Auxiliary Variable in Simple Random Sampling
page: 523 - 527
Author:Wuttichai Srisodaphol, Kunjira Kingphai and Nipaporn Tanjai
Vol.42 No.2 (APRIL 2015) View: 541 Download:230
Biogas Production from Poultry Slaughter House and Food Processing Wastes by Microwave Thermal Pretreatment
page: 456 - 468
Author:Natchari Chuchat , and Wanwisa Skolpap
Vol.42 No.2 (APRIL 2015) View: 573 Download:140
Moult in the Stripe-throated Bulbul, Pycnonotus finlaysoni: sexual differences and timing
page: 339 - 348
Author:Somboon Kamtaeja, Chatmongkol Suwannapoom, Narit Sitasuwan and Siriwadee Chomdej
Vol.42 No.2 (APRIL 2015) View: 507 Download:168
Above- and Below-Ground Ectomycorrhizal Diversity in a Pine-Oak Forest in Northeastern Thailand
page: 79 - 87
Author:Preeyaporn Dokmai, Cherdchai Phosri, Rungpetch Khangrang, Nuttika Suwannasai
Vol.42 No.1 (JANUARY 2015) View: 507 Download:161
Comparative Performances of the Variable Parameters Nonparametric Control Charts using the Markov Chain Approach
page: 1457 - 1472
Author:Adisak Pongpullponsak* and Vadhana Jayathavaj
Vol.41 No.5/2 (OCTOBER 2014) View: 511 Download:151
Effect of Fermented Red Dragon Fruit (Hylocereus polyrhizus) Liquid on Cholesterol and Triglycerides Level of Golden Syrian Hamsters
page: 1084 - 1093
Author:Foong Jia Huan*, Hon Wei Min and Ho Chun Wai
Vol.41 No.5/1 (OCTOBER 2014) View: 609 Download:260
PEG-Mediated Genetic Transformation of Fusarium oxysporum f. sp. Conglutinans to Study Pathogenesis in Cabbage
page: 945 - 956
Author:Wei Zhang*, Wensheng Zhao*, Jinguang Huang, Jianhai Feng*, Hong Yan, Laying Yang, Xinghong Li and Ji
Vol.41 No.4 (SPECIAL ISSUE 1) View: 483 Download:152
Spatial Distribution of Wood-Decaying Fungi in an Old-Growth Temperate Forest
page: 822 - 837
Author:Yu-Lian Wei, Hai-Sheng Yuan, Xu-Gao Wang and Wen-Min Qin
Vol.41 No.4 (SPECIAL ISSUE 1) View: 514 Download:214
Discovering and domesticating wild tropical cultivatable mushrooms
page: 731 - 764
Author:Anan Thawthong, Samantha C. Kurunarathna, Naritsada Thongklang, Ekachai Chukeatirote, Pattana Kakumy
Vol.41 No.4 (SPECIAL ISSUE 1) View: 557 Download:172
Unequal Probability Inverse Adaptive Cluster Sampling
page: 736 - 742
Author:Prayad Sangngam*
Vol.40 No.4 (OCTOBER 2013) View: 546 Download:160
Classification Techniques for Control Chart Pattern Recognition: A Case of Metal Frame for Actuator Production
page: 701 - 712
Author:Wimalin Laosiritaworn*, Tunchanit Bunjongjit
Vol.40 No.4 (OCTOBER 2013) View: 518 Download:160
Methods for Test Suite Selection in the Process of Software Maintenance
page: 689 - 700
Author:Adtha Lawanna
Vol.40 No.4 (OCTOBER 2013) View: 509 Download:162
Estuarine Macrophytes at Bakkhali, Cox’s Bazar, Bangladesh with Reference to Mangrove Diversity
page: 556 - 563
Author:Abu Hena M.K.*[a], Japar Sidik B. [a], Aysha A. [b], Ahasan H. [c] and Short F.T. [d]
Vol.40 No.4 (OCTOBER 2013) View: 542 Download:156
Production of a rabbit polyclonal anti-elephant IgG antibody for the elephant laboratory investigation
page: 376 - 385
Author:Preeyanat Vongchan*
Vol.40 No.3 (JULY 2013) View: 545 Download:226
Surface Modification of Hemp Fabric with Sparked Titanium and Electrophoretically Deposited CNTs for Reinforced Polyester Composites
page: 499 - 506
Author:Somjate Veingnon [a], Yaowamarn Chuminjak [a], and Pisith Singjai* [a], [b]
Vol.40 No.3 (JULY 2013) View: 503 Download:137
Investigation of Horizontal Sightline Offset on Horizontal Curves in Hyrcanian Forest Roads
page: 639 - 647
Author:Mehran Nasiri [a]*
Vol.39 No.4 (OCTOBER 2012) View: 617 Download:136
Multi-Faceted Measurement Framework for Test Case Classification and Fitness Evaluation using Fuzzy Logic based approach
page: 486 - 497
Author:Manoj Kumar*[a], Arun Sharma[b], Rajesh Kumar[c]
Vol.39 No.3 (JULY 2012) View: 550 Download:135
Actinomycetes from Tropical Limestone Caves
page: 373 - 388
Author:Nanthavut Niyomvong, Wasu Pathom-aree, Arinthip Thamchaipenet andKannika Duangmal
Vol.39 No.3 (JULY 2012) View: 539 Download:290
Anti-gastric ulcer and acute oral toxicity of aqueous extract of Turbinaria conoides from the Gulf of Thailand
page: 292 - 299
Author:Walailuck Boonchum[a], Panmuk Vacharapiyasophon[a], Duangta Kanjanapothi[b], Jeeraporn Pekkoh[a], Do
Vol.39 No.2 (APRIL 2012) View: 522 Download:173
Effect of Preliminary Unit Root Tests on Prediction Intervals for Gaussian Autoregressive Process with Additive Outliers
page: 8 - 29
Author:Wararit Panichkitkosolkul and Sa-aat Niwitpong
Vol.39 No.1 (JANUARY 2012) View: 548 Download:137
Preparation and Characterization of PET-PLA Copolyester from Waste PET and Lactic Acid (LA)
page: 619 - 624
Author:Achanai Buasri, Nattawut Chaiyut, Tanit Jenjaka, Sasirada Weerasunthorn and Sureerat Juengrun
Vol.38 No.4 (OCTOBER 2011) View: 504 Download:193
Probability Density Estimation Using Two New Kernel Functions
page: 1 - 12
Author:Manachai Rodchuen and Prachoom Suwattee
Vol.38 No.1 (JANUARY 2011) View: 537 Download:161
Confidence Interval Estimation for Right-Tailed Deviation Risk Measures Under Heavy-Tailed Losses
page: 13 - 22
Author:Monchaya Chiangpradit, Sa-aat Niwitpong
Vol.38 No.1 (JANUARY 2011) View: 526 Download:164
Influence of Seasonality on the Occurrence of Myxomycetes
page: 71 - 84
Author:Thida Win Ko Ko, Steven L. Stephenson, Kevin D. Hyde, and Saisamorn Lumyong
Vol.38 No.1 (JANUARY 2011) View: 490 Download:142
Antiproliferative Activity of Berberine from Coscinium fenestratum on NCI-H838 Cell Line
page: 85 - 94
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham, Shui-Tein Chen
Vol.38 No.1 (JANUARY 2011) View: 561 Download:169
Hexanal Vapours Suppress Spore Germination, Mycelial Growth, and Fungal-derived Cell Wall Degrading Enzymes of Postharvest Pathogens of Longan Fruit
page: 139 - 150
Author:Porntip Thavong, Douglas D. Archbold, Tanachai Pankasemsuk, Rumphan Koslanund
Vol.38 No.1 (JANUARY 2011) View: 555 Download:162
Towards a [4+2] Route to ()-decarestrictines J and H: Synthesis of a Bicyclic Key-intermediate
page: 181 - 184
Author:Sopa Chewchanwuttiwong [a], Arnaud Martel [b], Duang Buddhasukh [a], Eric Brown [b], Florian Gallie
Vol.31 No.2 May 2004 View: 575 Download:139
Ethnobotanical Studies in Muslim Thai Communities Located Around Toh-Daeng Peat Swamp Forest in Thailand
page: 157 - 170
Author:Ubonwan Upho* [a], Chusie Trisonthi [b] and Kongkanda Chayamarit [c]
Vol.31 No.2 May 2004 View: 547 Download:203
Polymerizability of Lactones Calculated by Molecular Mechanics, Semiempirical and Density Functional Theory Methods
page: 55 - 63
Author:Putarat Nimmanpipug, Ancalee Junkaew, Jitrayut Jitonnom and Vannjan Sanghiran Lee
Vol.34 No.1 (JANUARY 2007) View: 512 Download:156
Restricted-range Frequency Scanning of Airborne Reflected Ultrasonic Pulse Amplitudes
page: 23 - 28
Author:Sittisak Siriwitayakorn
Vol.34 No.1 (JANUARY 2007) View: 491 Download:140
Determination of Some Fatty Acids in Local Plant Seeds
page: 249 - 252
Author:Wanna Kanchanamayoon, and Wipada Kanenil
Vol.34 No.2 (MAY 2007) View: 522 Download:171
Biodiesel Synthesis from Transesterification by Clay-based Catalyst
page: 201 - 207
Author:Manut Jaimasith and Satit Phiyanalinmat
Vol.34 No.2 (MAY 2007) View: 556 Download:167
Estimation of Water Content in PEM Fuel Cell
page: 212 - 220
Author:Chinnavat Thawornkuno and Chanin Panjapornpon
Vol.35 No.1 (JANUARY 2008) View: 509 Download:246
Production Methyl Esters from Palm Fatty Acids in Supercritical Methanol
page: 23 - 28
Author:Duangkamol Yujaroen, Artiwan Shotipruk, Motonobu Goto and Mitsuru Sasaki
Vol.35 No.1 (JANUARY 2008) View: 591 Download:180
Investigation of the Crystal Structure in Segmented Triblock L-L actide, e-Caprolactone and Glycolide Terpolymer F ibres
page: 507 - 513
Author:Wasinee Channuan [a], Jintana Siripitayananon* [a], Robert Molloy [a], Montira Sriyai [a] and Geoff
Vol.32 No.3 (SEPTEMBER 2005) View: 478 Download:145
Novel Biodegradable Polyesters for Use as Absorbable Nerve Guides
page: 479 - 486
Author:Winita Punyodom* [a], Robert Molloy [a], Kanarat Nalampang [a], Chatchayanee Kamcharoen [a], Bu
Vol.32 No.3 (SEPTEMBER 2005) View: 560 Download:169
Pressure-Temperature Estimates of the Metamorphosed Sedimentary Rocks on the Eastern Side of Khao Phai, Immediate West of Ban Choeng Chai, Wang Pong, Phetchabun Province, Thailand
page: 283 - 293
Author:Yuenyong Panjasawatwong, Boontarika Srithai and Udomporn Wipakul
Vol.35 No.2 (MAY 2008) View: 531 Download:163
Model Analysis: A Quantum Approach to Analyze Student Understanding
page: 24 - 32
Author:Pornrat Wattanakasiwich, and Supon Ananta
Vol.36 No.1 (JANUARY 2009) View: 537 Download:206
Novel Tin(II) Butoxides for Use as Initiators in the Ring-Opening Polymerisation of ε-Caprolactone
page: 136 - 148
Author:Manita Dumklang, Nilobon Pattawong , Winita Punyodom, Puttinan Meepowpan, Robert Molloy, and Mark H
Vol.36 No.2 (MAY 2009) View: 565 Download:186
Chemical Constituents and Biological Activities of Chromolaena odorata
page: 139 - 148
Author:Nisit Pisutthanan [a,b], Saisunee Liawruangrath [c], John B. Bremner [d] and Boonsom Liawruangrath*
Vol.32 No.2 (MAY 2005) View: 716 Download:300
What Analytical Chemists Do : A Personal Perspective
page: 81 - 92
Author:Gary D. Christian
Vol.32 No.2 (MAY 2005) View: 2,366 Download:393
Effect of Hardness Test on Precipitation Hardening Aluminium Alloy 6061-T6
page: 276 - 286
Author:Chee Fai Tan, and Mohamad R. Said
Vol.36 No.3 (SEPTEMBER 2009) View: 551 Download:256
On Preliminary-prediction Intervals for the Difference Between Two Means with Missing Data
page: 21 - 28
Author:Sa-aat Niwitpong, Pawat Paksaranuwat, and Suparat Niwitpong
Vol.37 No.1 (JANUARY 2010) View: 539 Download:172
New Estimator for an Unknown Mean Gaussian AR(1) Process with Additive Outliers
page: 14 - 20
Author:Wararit Panichkitkosolkul
Vol.37 No.1 (JANUARY 2010) View: 583 Download:135
Nonparametric Methods in the Two-Way Layout
page: 103 - 115
Author:John Öhrvik
Vol.29 No.2 (AUGUST 2002) View: 486 Download:175
Modification of Unrelated Question Randomized Response Model*
page: 49 - 52
Author:Noodchanath Kongchouy and Surin Khanabsakdi**
Vol.29 No.1 (APRIL 2002) View: 509 Download:159
Anti-Cancer Compound Screening and Isolation: Coscinium fenestratum Tinospora crispa and Tinospora cordifolia
page: 476 - 488
Author:Rudeewan Tungpradit, Supachok Sinchaikul, Suree Phutrakul, Weerah Wongkham and Shui-Tein Chen
Vol.37 No.3 (SEPTEMBER 2010) View: 571 Download:231
TPA-ZrO2-SiO2-Catalyzed Polyesterification of TMP Polyester
page: 397 - 409
Author:Li Fang, Xiang-Dong Geng, Diansheng Liu, Jian Gao, Li-Juan He, Ya-Juan Hao and Surin Saipanya
Vol.37 No.3 (SEPTEMBER 2010) View: 578 Download:179



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