Journal Volumes


Visitors
ALL : 2,315,205
TODAY : 8,505
ONLINE : 589

  JOURNAL DETAIL



CFPG: Creating a Common Fungal Pathogenic Genes Database through Data Mining


Paper Type 
Contributed Paper
Title 
CFPG: Creating a Common Fungal Pathogenic Genes Database through Data Mining
Author 
Kenneth Lee Shean Tan and Saharuddin Bin Mohamad
Email 
saharuddin@um.edu.my
Abstract:

     Fungal pathogenicity is one of the most vigorously tackled ecological and medicinal issues facing many scientists. Comparative genomics is an extremely important methodology and tool used to understand fungal pathogenicity, and it allows the development of early diagnostic tools for fungal-inflicted diseases across different host organisms. However, comparative genomics depends heavily on readily available fungal pathogenic gene databases to enable downstream genomics study and the development of new diagnosis and detection methods. Here, we have developed the Common Fungal Pathogenic Genes Database through comparative genomic analysis using 86 publicly available fungal genomic data against fungal pathogenicity-related databases, such as Pathogenic-Host Interaction Database (PHI-base), Carbohydrate-Active enZymes Database (CAZy), and Database of Fungal Virulence Factory (DFVF).

Article ID
e2024038
Received Date 
2023-09-28
Revised Date 
2024-03-14
Accepted Date 
2024-03-28
Full Text 
  Download
Keyword 
comparative genomics, pathogenic fungi, bioinformatics, data mining, open source, database
Volume 
Vol.51 No.3 (May 2024)
DOI 
https://doi.org/10.12982/CMJS.2024.038
Citation 
Tan K.L.S. and Mohamad S.B., CFPG: Creating a Common Fungal Pathogenic Genes Database through Data Mining, Chiang Mai J. Sci., 2024; 51(3): e2024038. DOI 10.12982/CMJS.2024.038.
SDGs
View:1,021 Download:255

  RELATED ARTICLE

Endophytic Fungi from Oncosperma sp. with Promising In Vitro Plant Growth Promotion and Antagonistic Activities
page: 837 - 852
Author:Machima Saengket, Kevin D Hyde, Vinit Kumar, Mingkwan Doilom and Siraprapa Brooks
Vol.48 No.3 (Special Issue I : May 2021) View: 881 Download:516
SDGs:
Enhancing the Diagnostic Performance of Intelligent Database Design Tools - An Evaluation of the thesaurus Technique
page: 7 - 17
Author:Shahrul A. Noah* and Michael Williams
Vol.30 No.1 (APRIL 2003) View: 560 Download:182
Open Source Library-based 3D Face Point Cloud Generation
page: 1875 - 1887
Author:Bulent Bayram, Taskin Ozkan, Hatice Catal Reis, Tolga Bakirman, Ibrahim Cetin and Dursun Zafer Seker
Vol.45 No.4 (July 2018) View: 641 Download:315
Antibacterial Agents from Trichoderma harzianum strain T9 Against Pathogenic Bacteria
page: 304 - 316
Author:Weeraya Phupiewkham, Pisan Sirithorn, Weerasak Saksirirat, Sompong Thammasirirak
Vol.42 No.2 (APRIL 2015) View: 652 Download:231
Assessing the Impact of Dominant Sequencing-Based Gene Expression Profiling Techniques (SGEPTs) on Phytopathogenic Fungi
page: 922 - 944
Author:Dawei Wang and Youliang Peng*
Vol.41 No.4 (SPECIAL ISSUE 1) View: 544 Download:175
RNA family classification using the conditional random fields model
page: 1 - 7
Author:Sitthichoke Subpaiboonkit[a], Chinae Thammarongtham[b] and Jeerayut Chaijaruwanich*[a,b,d]
Vol.39 No.1 (JANUARY 2012) View: 845 Download:2,936
The need for re-inventory of Thai phytopathogens
page: 625 - 637
Author:Thida win Ko Ko, Eric Hugh Charles McKenzie, Ali Hassan Bahkali, Chaiwat To-anun, Ekachai
Vol.38 No.4 (OCTOBER 2011) View: 561 Download:341
An Improved Algorithm for Protein Structural Comparison Based on Graph Theoretical Approach
page: 71 - 81
Author:Cheng-Hsien Hsu [a], Sheng-Lung Peng*[b], and Yu-Wei Tsay [b]
Vol.38 (SPECIAL ISSUE 2011) View: 586 Download:191
Cloning and Expression of Chitinase Gene Isolated from Insect Pathogenic Fungi, Beauveria bassiana in Escherichia coli
page: 347 - 355
Author:Khemika Songjang*[a], Tawee Donchai [a], Paranya Chaiyawat [a] and Christopher R. Meyer [b]
Vol.33 No.3 (SEPTEMBER 2006) View: 581 Download:171
Metal Frame for Actuator Manufacturing Process Improvement Using Data Mining Techniques
page: 421 - 428
Author:Wimalin Laosiritaworn, and Pongsak Holimchayachotikul
Vol.37 No.3 (SEPTEMBER 2010) View: 640 Download:245



Search in this journal


Document Search


Author Search

A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z

Popular Search






Chiang Mai Journal of Science

Faculty of Science, Chiang Mai University
239 Huaykaew Road, Tumbol Suthep, Amphur Muang, Chiang Mai 50200 THAILAND
Tel: +6653-943-467




Faculty of Science,
Chiang Mai University




EMAIL
cmjs@cmu.ac.th




Copyrights © Since 2021 All Rights Reserved by Chiang Mai Journal of Science