Submit your paper 
Download Template JOURNAL DETAIL
RNA family classification using the conditional random fields model
Paper Type  |
Contributed Paper |
Title |
RNA family classification using the conditional random fields model |
Author |
Sitthichoke Subpaiboonkit[a], Chinae Thammarongtham[b] and Jeerayut Chaijaruwanich*[a,b,d] |
Email |
jeerayut@science.cmu.ac.th |
|
Abstract: RNA family classification is one of the necessary tasks needed to characterize sequenced genomes. RNA families are defined by member sequences which perform the same function in different species. Such functions have a strong relationship with RNA secondary structures but not the primary sequence. Thus RNA sequences alone are not sufficient to classify RNA families. Here, we focus on computational RNA family classification by exploring primary sequences with RNA secondary structures as the selected feature to classify the RNA family using the method of conditional random fields (CRFs). This model treats RNA data sets with optimal F-score prediction between 98.77% - 99.32% for different RNA families. |
|
Start & End Page |
1 - 7 |
Received Date |
2011-06-21 |
Revised Date |
|
Accepted Date |
2011-10-06 |
Full Text |
Download |
Keyword |
RNA family classification, Conditional random fields, bioinformatics, machine learning |
Volume |
Vol.39 No.1 (JANUARY 2012) |
DOI |
|
Citation |
Subpaiboonkit[a] S., Thammarongtham[b] C., Chaijaruwanich*[a J., B and D] , RNA family classification using the conditional random fields model, Chiang Mai Journal of Science, 2012; 39(1): 1-7. |
SDGs |
|
| View:1,382 Download:3,003 | |
RELATED ARTICLE
Article ID: e2025017
Author:Qing Hu and Fenhua Zhu
Vol.52 No.2 (March 2025) View: 134 Download:22
Article ID: e2024095
Author:Zhen Liu, Yiwei Fu, Jiangsong Jiang, Ya Huang, Dong Li, Yikun Yue, Shaochun Yuan and Chengzhi Wang
Vol.51 No.6 (November 2024) View: 421 Download:200
Article ID: e2024038
Author:Kenneth Lee Shean Tan and Saharuddin Bin Mohamad
Vol.51 No.3 (May 2024) View: 1,679 Download:910
page: 661 - 671
Author:Supattanawaree Thipcharoen [a,b], Watshara Shoombuatong [c], Samerkae Somhom [b], Rattasit Sukhahuta [b], Jeerayut Chaijaruwanich*[a,b]
Vol.43 No.3 (APRIL 2016) View: 693 Download:206
page: 71 - 81
Author:Cheng-Hsien Hsu [a], Sheng-Lung Peng*[b], and Yu-Wei Tsay [b]
Vol.38 (SPECIAL ISSUE 2011) View: 1,092 Download:209
Copyrights © Since 2021 All Rights Reserved by Chiang Mai Journal of Science