Paper Type |
Contributed Paper |
Title |
Development of Colorimetric Loop-Mediated Isothermal Amplification (LAMP) Technique for Rapid, Sensitive and Convenient Detection of Chrysanthemum Chlorotic Mottle Viroid (CChMVd) in Chrysanthemum |
Author |
Salit Supakitthanakorn, Karnjana Vichittragoontavorn, Kaewalin Kunasakdakul, Nilita Mukjang, Chatsuda Phuakjaiphaeo and On-Uma Ruangwong |
Email |
on-uma.r@cmu.ac.th |
Abstract: Chrysanthemum chlorotic mottle viroid (CChMVd) is a serious pathogen infecting chrysanthemum worldwide. To improve and enhance the detection procedure, the colorimetric loop-mediated isothermal amplifi cation (LAMP) technique was developed. Six LAMP primers were newly designed and tested the optimal conditions using a recombinant plasmid of CChMVd as a DNA template. The optimal conditions for colorimetric LAMP were incubation at 65°C for 60 min. At these conditions, the ladder-liked pattern LAMP products were detected along with the change of color from pink to yellow in the positive reactions. The sensitivity of colorimetric LAMP was up to 2.18 × 103 copies of recombinant plasmid concentration which was 104-fold greater than that of polymerase chain reaction (PCR). The developed colorimetric LAMP was not cross reacted to other viruse s and viroid. Effi ciency of colorimetric reverse transcription (RT)-LAMP for detecting CChMVd in chrysanthemum plantlets obtained from meristem tip culture was evaluated to verify and ensure CChMVd-free plantlets production. The results showed that 18 chrysanthemum plantlets were free of CChMVd contamination. Therefore, the colorimetric RT-LAMP can be used to detect CChMVd routinely due to its accuracy, rapidness and sensitivity. |
|
Start & End Page |
1296 - 1306 |
Received Date |
2022-05-11 |
Revised Date |
2022-08-05 |
Accepted Date |
2022-08-19 |
Full Text |
Download |
Keyword |
ornamental plant, meristem culture, molecular detection, Pelamoviroid |
Volume |
Vol.49 No.5 (September 2022) |
DOI |
https://doi.org/10.12982/CMJS.2022.079 |
Citation |
Supakitthanakorn S., Vichittragoontavorn K., Kunasakdakul K., Mukjang N., Phuakjaiphaeo C. and Ruangwong O., Development of Colorimetric Loop-Mediated Isothermal Amplification (LAMP) Technique for Rapid, Sensitive and Convenient Detection of Chrysanthemum Chlorotic Mottle Viroid (CChMVd) in Chrysanthemum, Chiang Mai J. Sci., 2022; 49(5): 1296-1306. DOI 10.12982/CMJS.2022.079. |
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